Naisha Thakkar
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Computational Notebooks & Tools (In Progress)

I am currently building and documenting computational biology workflows, machine learning models for bioactivity prediction, and paper reproductions using Python, RDKit, and PyTorch.

Python
RDKit
Biopython
Machine Learning
Jupyter

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Overview

This section will host open Jupyter notebooks, reproducible code repositories, and interactive cheminformatics tools as they are completed.

The Problem

Translating biological data into machine learning models requires rigorous data cleaning, descriptor calculation, and model validation.

Methodology

Workflows are built in Python using specialized libraries like Biopython, RDKit, and scikit-learn, with code structured for open reproduction.

Results

First project notebooks and interactive dashboards will be published here soon.

Future Directions

Initial releases will focus on bioactivity prediction pipelines and molecular docking benchmarks.